Computer Science Grader Assistant
Computer Science Grader Assistant is a software to help teachers and graders in grading computer science assignments that has to be compiled and executed. It p
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Science Lab Inventory Order Management to run in Windows online over Linux online
Science Laboratory Inventory and Orders Management System: suitable for school's science laboratories to manage stored items (chemical and equipment) and ad
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Science Lab Inventory Order Management
Science Laboratory Inventory and Orders Management System: suitable for school's science laboratories to manage stored items (chemical and equipment) and a
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LSG (Life Science Grid)
LSG is a Windows application framework designed for visual data integration and based on Microsoft .NET 2.0 and CAB. An admin utility manages LSG apps, modules
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Catania Science Gateway Framework
Audience: Science/Research, Education, Developers, Testers. User interface: Web-based. Programming Language: JavaScript, JSP, Java. Categories: Scientific/Engi
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LSG (Life Science Grid) to run in Windows online over Linux online
LSG is a Windows application framework designed for visual data integration and based on Microsoft .NET 2.0 and CAB. An admin utility manages LSG apps, modules,
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Science Fair In A Box
SFIAB is a complete science fair management system written in PHP with MySQL backend database. It manages all aspects of running a school, city, regional, etc
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LSID (Life Science Identifier)
Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Li
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"Philosophy and Science"
Features: NewtonChinese philosophynatural sciencephilosophy . This is an application that can also be fetched from https: //sourceforge.net/projects/philosoph
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Tree of Computer Science
A set of data for computer science history (languages, OS, Distro, etc.) and tools. Audience: Education, System Administrators. Categories: Database, Library,
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Tree of Computer Science to run in Windows online over Linux online
A set of data for computer science history (languages, OS, Distro, etc.) and tools Audience: Education, System Administrators. This is an application that can a
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Political Science: Campaign Simulator to run in Windows online over Linux online
The Campaign Simulator is an attempt to statistically model and predict the outcome of an American presidential election; several users assume the roles of comp
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ExptML: A Markup Language for Science to run in Windows online over Linux online
The Experiment Markup Language (ExptML) is a markup language, in XML, designed to store all the data and metadata (context) from all parts of the scientific pro
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LSID (Life Science Identifier) to run in Windows online over Linux online
Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Lif
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Data Science Interviews
Data Science Interviews is an open-source repository that collects common data science interview questions along with community-provided answers and explanatio
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The Earth Science Markup Language
ESML is an interchange technology that utilizes external metadata to allow applications to plug and play seamlessly with Earth Science specific datasets in het
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Political Science: Campaign Simulator
The Campaign Simulator is an attempt to statistically model and predict the outcome of an American presidential election; several users assume the roles of com
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The Earth Science Markup Language to run in Windows online over Linux online
ESML is an interchange technology that utilizes external metadata to allow applications to plug and play seamlessly with Earth Science specific datasets in hete
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Scientia - The science database
The idea of Scientia is to have a place where scripts, info etc can be downloaded for free. Books are expensive and lots of good information is spread all over
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Life Science Identifier (LSID) Spec
Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Inte
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SciPhi Science Fiction MU*
A project to create a MU* interface for Science Fiction based MU*s with full internal scripting. Now being written in C# Audience: Developers. User interface: W
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AWESOME DATA SCIENCE
An open source Data Science repository to learn and apply towards solving real world problems. This is a shortcut path to start studying Data Science. Just fol
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Scientia - The science database to run in Windows online over Linux online
The idea of Scientia is to have a place where scripts, info etc can be downloaded for free. Books are expensive and lots of good information is spread all over
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Life Science Identifier (LSID) Spec to run in Windows online over Linux online
Life Science Identifier (LSID) Specification is a globally unique identifying scheme for information resources on the life sciences domain. It is based on Inter
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data-science-on-gcp
The data-science-on-gcp repository is a comprehensive collection of code examples and end-to-end workflows that accompany the book Data Science on the Google C
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Data Science Collected Resources
Data Science Collected Resources is a curated collection of learning materials and reference links covering a wide range of topics in data science, artificial
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Computer Science Tutorials
This is a collection of tutorial projects that are used by my computer science students to learn the ins and outs of software design and development. The prima
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Data-Science-Interview-Questions-Answers
Data-Science-Interview-Questions-Answers is a curated educational repository designed to help data science candidates prepare for technical interviews by organ
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Applied Science
This is the work of Tim Hill (lead programmer) and Lashan Dias (lead artist). Audience: Developers, End Users/Desktop. Programming Language: C#. Categories: Si
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SciPhi Science Fiction MU* to run in Windows online over Linux online
A project to create a MU* interface for Science Fiction based MU*s with full internal scripting. Now being written in C# Audience: Developers. User interface: W
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AI Data Science Team
AI Data Science Team is a Python library and agent ecosystem designed to accelerate and automate common data science workflows by modeling them as specialized
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Social Science Measurement
This project aims to develop open source psychometric data analysis software, including estimation software for Rasch and Item Response Theory (IRT) models for
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Applied Science to run in Windows online over Linux online
This is the work of Tim Hill (lead programmer) and Lashan Dias (lead artist). Audience: Developers, End Users/Desktop. Programming Language: C#. This is an appl
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Social Science Measurement to run in Windows online over Linux online
This project aims to develop open source psychometric data analysis software, including estimation software for Rasch and Item Response Theory (IRT) models for
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Data science blogs
Data Science Blogs is a curated repository that aggregates a wide range of high-quality blogs and resources related to data science, machine learning, and anal
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JSci - A science API for Java
JSci is a set of open source Java packages. The aim is to encapsulate scientific methods/principles in the most natural way possible. As such they should great
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ITB Computer Science Code
Institute of Technology, Blanchardstown Computer Science code by the class of 2007-2011 on course BN104. In this project we are open sourcing all of our projec
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JSci - A science API for Java to run in Windows online over Linux online
JSci is a set of open source Java packages. The aim is to encapsulate scientific methods/principles in the most natural way possible. As such they should greatl
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Science Plots
Matplotlib styles for scientific figures. This repo has Matplotlib styles to format your figures for scientific papers, presentations, and theses. Features: Th
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R4DS (R for Data Science)
“R for Data Science” (r4ds) is the source material (book + examples) by Hadley Wickham et al., intended to teach data science using R and the tidyverse. It cov
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Computer Science (OSSU)
OSSU (Open Source Society University) Computer Science is a free, peer?maintained, self?paced undergraduate-level CS curriculum using high-quality open online
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Crash-Course-Computer-Science-Chinese
Crash-Course-Computer-Science-Chinese is a translation and subtitle project for the full 40-episode Crash Course Computer Science series. It offers high-qualit
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Cookiecutter Data Science
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think j
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Python Data Science Handbook
The Python Data Science Handbook is a comprehensive collection of Jupyter notebooks written by Jake VanderPlas covering fundamental Python libraries for data s
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Machine Learning and Data Science Apps
This repository is a large curated collection of machine learning and data science resources focused on real-world industry applications. Instead of being a si
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Computer Science courses video lectures
This repository is a curated list of full-length computer science Video lecture series across many universities and MOOC platforms, helping learners assemble t
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Science Olympiad Scoring System
This is an Excel based scoring system for use at Science Olympiad tournaments. Versions have been in use since 2002 at tournaments all over the country. It is
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PSLab Android App
Repository for the PSLab Android App for performing experiments with the Pocket Science Lab open-hardware platform. This repository holds the Android App for p
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Guia do Cientista de Dados das Galáxias
Guia do Cientista de Dados das Galáxias is an open-source community repository that aggregates educational resources, tools, and references related to data sci
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Julia.jl
Julia.jl is a curated collection of knowledge resources for the Julia programming language, designed to support high-performance numerical analysis and computa
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genome
This project provides visual interactive interfaces to custom algorithms used in genomes research. Audience: Developers, Education, Science/Research. User inte
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Kale
KALE (Kubeflow Automated pipeLines Engine) is a project that aims at simplifying the Data Science experience of deploying Kubeflow Pipelines workflows. Kubeflo
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TreQ
TreQ aims at mapping reads from next generation sequencing (NGS) data to a reference genome, with emphasis on accuracy in the presence of structural variations
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PocketAnalyzerPCA
PocketAnalyzerPCA combines a geometric algorithm for detecting pockets in proteins with Principal Component Analysis and clustering. This enables visualization
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PyBact
PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the
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BioNLP-Corpora
BioNLP-Corpora is a repository of biomedically and linguistically annotated corpora and biomedical data sources. There are many resources available in separate
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ProTag
ProTag integrates biological web services and online databases seamlessly into the Microsoft Office applications Word, Excel and PowerPoint. It is extensible a
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bruread
bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplo
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Neural Networks for Number Recognition to run in Windows online over Linux online
The source code for my(Ben Thompson) 10th grade neural network science fair project. UPDATE: Got 2nd in the regional fair, 3rd in the state, 4th in internationa
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DEEP
The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Dif
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WSciParser
WSciParser (Web Science Parser) is a handy small library created in C#.NET to parse data from web science databases (ISI Web, NCBI, PubMed.). Features: Full ex
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openSputnik
openSputnik is a robust distributed platform for massive scale precalculation of genetic and genomic data using contemporary bioinformatics methods. Annotated
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OTforge
OpenTopography facilitates community access to high-resolution, Earth science-oriented, lidar topography data, & related tools. OTforge serves as our open
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WSciParser to run in Windows online over Linux online
WSciParser (Web Science Parser) is a handy small library created in C#.NET to parse data from web science databases (ISI Web, NCBI, PubMed.) Features: Full extr
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OTforge to run in Windows online over Linux online
OpenTopography facilitates community access to high-resolution, Earth science-oriented, lidar topography data, & related tools. OTforge serves as our open s
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papco
PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in princip
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DataScienceR
The DataScienceR repository is a curated collection of tutorials, sample code, and project templates for learning data science using the R programming language
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TraceViewer
TraceViewer provides several functionalities needed by any biologist who wants to efficiently analyse his/her trace data. Audience: Education, Healthcare Indus
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Turkish Human Mutation Database
The rapid accumulation of human mutation data has led to the idea of establishing a national/ethnic database in Turkey endorsed by HUGO-MDI/HGVS. The interdisc
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papco to run in Windows online over Linux online
PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in principl
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sciNote
sciNote is an open source electronic lab notebook (ELN) that helps you manage your laboratory work and stores all your experimental data in one place. sciNote
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BYU EDIF Tools
An API for manipulating EDIF netlists in Java. We use this API to analyze netlists as a part of our FPGA reliability project. We intend to keep the API as gene
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BibGlimpse MEDLINE Retriever
Literature management tools typically require that bibliography is typed in by hand for each PDF reprint added. The BibGlimpse retriever presented here can aut
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BYU EDIF Tools to run in Windows online over Linux online
An API for manipulating EDIF netlists in Java. We use this API to analyze netlists as a part of our FPGA reliability project. We intend to keep the API as gener
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composight
Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-s
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S4PM
The Simple, Scalable, Script-based Science Processor for Measurements (S4PM) is a system for highly automated processing of science data, scalable up to large
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dupost
A coupled dual porosity Stokes model implemented with FEniCS. References: 1. C. Douglas, X. Hu, B. Bai, X. He, M. Wei and J. Hou, "A Data Assimilation Enab
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SPADE
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics,
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CS-Ebook
CS-Ebook is a curated repository that compiles high-quality and classic computer science books across a wide range of software-related fields. It focuses on de
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composight to run in Windows online over Linux online
Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-sp
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S4PM to run in Windows online over Linux online
The Simple, Scalable, Script-based Science Processor for Measurements (S4PM) is a system for highly automated processing of science data, scalable up to large p
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DDMaker
DDMaker perform local density analysis and generates pseudocolor maps of the spatial distribution of imaged cellular structures in 2D images, starting from eit
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dupost to run in Windows online over Linux online
A coupled dual porosity Stokes model implemented with FEniCS. References: 1. C. Douglas, X. Hu, B. Bai, X. He, M. Wei and J. Hou, "A Data Assimilation Enabl
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SeaBreeze
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP
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Chemistry Calculator
Solve equations, view charts and graphs, make conversions, balance equations and more. Chemistry Calculator. Audience: Healthcare Industry, Science/Research, E
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Evrika
Evrika is a science simulator and advanced calculator, which is based on modules. Modules are libraries containing definitions of concepts that can be used in
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PPICompare
PPICompare detects statistically significant rewiring events in protein-protein interaction networks - even if they are caused by alternative splicing - and re
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SpectralWorks
Program for viewing, editing, manipulating, and analyzing absorbance spectra. Simple arithnetic includes making linear combinatins of up to 10 spectra. Advance
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PPIXpress
Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their t
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OpenCFU
OpenCFU is a completely open source lightweight application designed to enumerate clustered circular objects such as bacterial colonies. It can handle digital
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Density-ratio based clustering
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is t
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Phobos Application
Phobos is to be used for recording rodents' behavior during the thigmotaxis (open-field) and the elevated plus-maze tests. Phobos provides the possibility
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Density-ratio based clustering to run in Windows online over Linux online
This site provides the source code of two approaches for density-ratio based clustering, used for discovering clusters with varying densities. One approach is t
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CT4AM
CT4AM is a cross-platform toolkit for 3D-image processing in the domain of additive manufacturing for toolpath visualisation or correlation to tomographic data
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XGBoost
XGBoost is an optimized distributed gradient boosting library, designed to be scalable, flexible, portable and highly efficient. It supports regression, classi
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Tree Visualisation with Visual Cues
This project extends a previous work on node link tree visualisation and interaction by providing visual clues on hidden structures. We adopt DOITree from Pref
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DEEP to run in Windows online over Linux online
The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Diff
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Avogadro
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and
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emacs-w64
A GNU Emacs binary distribution for users who want to use Emacs natively in 64-Bit Windows (x86_64). This project will focus on providing unmodified, up-to-date
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OpenSIMPLY
OpenSIMPLY is an open source project for simulation modeling in Delphi, Lazarus, Free Pascal. Download OpenSIMPLY at opensimply.org The project is free compute
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DeepAnalyze
DeepAnalyze is an open source project that introduces an agentic large language model designed to perform autonomous data science tasks from start to finish. I
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CS Notes
CS-Notes is a comprehensive, community-driven collection of study materials and technical notes for computer science students and professionals. Created by CyC
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A Whirlwind Tour of Python
A Whirlwind Tour of Python is a concise but fast-paced introduction to core Python concepts, created by Jake VanderPlas as a companion to his work in scientifi
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pythia
Pythia is a thermodynamically based PCR primer design program. Audience: Science/Research. Programming Language: C, Python. Categories: Bio-Informatics, Molecu
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CUBS
Chicago Utilities for Bioinformatic Science. Audience: Science/Research, End Users/Desktop. User interface: Web-based. Categories: Bio-Informatics
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Adaptive Intelligence
Adaptive Intelligence is the implementation of neural science, forensic psychology , behavioral science with machine-learning and artificial intelligence to pr
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CDKTools
The Octet-CDK interoperability package. Audience: Developers, Education, Science/Research. Programming Language: Java. Categories: Bio-Informatics, Chemistry,
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TabuVis
TabuVis is a comprehensive visual analysis tool that provides a flexible, customizable and interactive visualization for tabular (or multidimensional) data. It
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RAM
The aim of this project is to realize an implementation of a Random Access Machine (which is a common tool in theory of computer science). Audience: Education,
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DataShot
Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-
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pHp
close. Audience: Healthcare Industry, Science/Research, Education, Developers. User interface: Web-based. Programming Language: PHP. Categories: Communications
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Sit_to_Stand_Categorization
Audience: Healthcare Industry, Science/Research, Engineering. Categories: Medical Science Apps.
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iMol
sdf file viewer. Audience: Science/Research. User interface: OpenGL, wxWidgets. Programming Language: C++. Categories: Molecular Science, Chemistry
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3D HIV
A project to create an interactive, scientifically-accurate 3D model of the HIV virus. Particularly intended for use in education. Audience: Education, Science
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Pgenesniffer
This tool will allow individuals to find and quantify the overlap of variants with pseudogenic sequences. Audience: Science/Research. Programming Language: S/R
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EvalMSA
Audience: Science/Research, End Users/Desktop. User interface: Console/Terminal. Programming Language: Perl. Categories: Molecular Science, Bio-Informatics
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scikit-learn-videos
scikit-learn-videos repository accompanies a Video tutorial series designed to teach machine learning using Python’s scikit-learn library. It provides the Jupy
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VariScan
VariScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Audience: Science/Research. User interface: Command-li
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Leo toolbox
Audience: Science/Research. User interface: Other toolkit. Programming Language: MATLAB. Categories: Medical Science Apps.
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Gen3D
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional c
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TauFactor
Please contact the author at [email protected] for any questions or if you wish to cite this application in a academic study. Journal paper available here
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Nanoneer
A nano cad program used to model nanotechnologies and maybe in later versions simulate the models. Audience: Science/Research. User interface: .NET/Mono. Progr
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CUBS to run in Windows online over Linux online
Chicago Utilities for Bioinformatic Science Audience: Science/Research, End Users/Desktop. User interface: Web-based. This is an application that can also be fe
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JMolDraw
2-D chemical structure drawing program. Audience: Science/Research. User interface: Java Swing. Programming Language: Java. Categories: Molecular Science, Chem
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rfxplot
RFXPLOT is a versatile toolbox for data visualization for random effects (RFX) analyses in SPM. Audience: End Users/Desktop, Science/Research. Programming Lang
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cnsFace
cnsFace is a GUI for the Crystallography and NMR System. Audience: End Users/Desktop, Science/Research. User interface: wxWidgets. Programming Language: Python
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Gadgetron
Medical Image Reconstruction Framework. Audience: Healthcare Industry, Science/Research, Advanced End Users, Developers. Programming Language: Python, C++. Cat
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Xpose
Xpose - an S/R based population PK/PD model building aid for NONMEM. Audience: Science/Research. User interface: Console/Terminal. Programming Language: S/R. C
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Moleculizer
Moleculizer is a tool for simulating and generating biochemical reaction networks that are specified through a set of rules for protein-protein interactions. A
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DataShot to run in Windows online over Linux online
Applications to support the efficient capture of data from natural science collections specimens (particularly entomological collections), by facilitating pre-c
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TheCounter
TheCounter was designed as a helping hand for people who need to count specifically labeled cells in histochemically or immunohistochemically stained tissue sa
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sibRNAfold
The sibRNAfold program is a modification of the Vienna RNAfold program for RNA secondary structure prediction through energy minimization. Audience: Education,
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RCFPD
An R package for distribution of data analysis functionality used by the Proteomics Core at Weill Cornell Medical College in Qatar. Audience: Science/Research,
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ABIFManager
Audience: Science/Research, Education. Programming Language: Visual Basic .NET. Categories: Molecular Science
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RadLex
Tools designed to assist in creating and using the RadLex ontology (http: //www.radlex.org). Audience: Education, Healthcare Industry, Science/Research. Progra
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Vimes
Vimes: Visual interface to materials simulations - An open source, python/Open GL interface to molecular and materials simulation programs. Audience: Science/R
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SrsUrlApi
A Perl client library to access Sequence Retrieval System (SRS) servers using the REST/CGI API provided by SRS. Audience: Science/Research, Developers. Program
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Octet
Octet is an object-oriented molecular representation framework written in Java. Audience: Developers, Education, Science/Research. User interface: Web-based, W
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DissoKin
Audience: Non-Profit Organizations, Government, Healthcare Industry, Science/Research, Advanced End Users. User interface: Win32 (MS Windows). Programming Lang
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Janocchio
Janocchio is an application or applet for viewing 3D molecular structures and calculating NMR couplings and NOEs. Audience: Science/Research. User interface: J
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fiswidgets
Graphical Desktop for running workflows (processing pipelines) for neuroimaging analysis. Audience: Developers, Science/Research. User interface: Java Swing. P
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SigViewer
SigViewer is a viewer for biosignals such as EEG, EMG, and ECG. SigViewer supports various file formats. Besides viewing biosignals, SigViewer can also create
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vbFRET
This is a Matlab software package for single molecule FRET data analysis. Audience: Engineering, Science/Research. Programming Language: MATLAB. Categories: Bi
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SAOSIS to run in Windows online over Linux online
SAOSIS is a Java-based Open-Source library designed to help Life Science organizations manage bioinformatic data. Audience: Science/Research. Programming Langua
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GMOL
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromos
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lrrr
Extraction of binding sites of ligands and search for unknown binding sites on apoproteins. Some call it docking. Some call it binding site detections. Some ca
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hustthesis
HUST Thesis (hustthesis) is a project initiated by graduate students of Huazhong Univ. of Science and Technology (HUST), China to deliver a LaTeX template for
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matNMR
MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-ba
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PowerMath CAS
PowerMath is a computer algebra system designed for all science. It has the ability, but not the limitation, to complete advanced or simple science and math pr
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ED Software
ED Software project contains several programs used (mostly) for processing gas-phase electron diffraction (GED) experimental data. Audience: Science/Research.
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Gen3D to run in Windows online over Linux online
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional co
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ManyMinds
ManyMinds is a java environment for building agent-based software. It is primarily for developing educational software (even more specifically, middle school i
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libamtrack
A library contaning amorphous track based algorithms and auxiliary routines for the prediction of detector response and radiobiological cross-sections in heavy
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FMR Eyetrack
FMR Eyetrack is a SPM plugin that allows to directly estimate the point of gaze from the functional MRI data without the help of a dedicated eye tracker. I am
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VTVH
Program for the simulation and fitting variable temperature - variable field MCD spectra. Can specify spin=1/2,1,.5/2 and coupled spin systems. Audience: Scien
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SynBioLib
SynBioLib -- your toolkit for synthetic biology applications. SynBioLib aims to establish a platform on which the Synthetic Biology community can develop and s
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Disco
Disco (DIStribution of COnformations) is a software package for the estimation of solution conformations of organic molecules. It is rewritten form of NAMFIS m
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Animal Imaging
"animal-imaging" is a project to collect and disseminate information on imaging technologies (e.g. CT, MRI, PET, ultrasound) pertinent to the vivo imag
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Vet+
Vet+ Is currently being renewed. Downloading is not recommended until further notice. Audience: Healthcare Industry, Science/Research. User interface: Web-base
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Color Deconvolution for TMA images
This is a collection of ImageJ macros (scripts) for performing color deconvolution and analysis of immunohistochemistry (IHC) staining on tissue microarray (TM
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SimCell.net
This SimCell.net project is an independent port of the SimCell java app. The goal for this effort is to model molecular self assembly (cell membranes and other
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PiViTi
This pharmacovigilance web application permits you to process a query on the Adverse Event Reporting System (AERS) data which is published by the U.S. Food and
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FluoroCorrect
FluoroCorrect is a Matlab-based, open source software package designed for correcting image deformations introduced by X-ray image intensifiers in fluoroscopy
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oscilib
Oscilib (Open Science Library) aims to be a comprehensive suite of programs that provide a simple useful way to solve common scientific and mathematical proble
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MERRYts
MERRYts is the Most Efficient Reader for Representing Your Terminology System. One GUI for all (medical) Terminology Systems. Audience: Information Technology,
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HAPMIXMAP
A program to model HapMap haplotypes in genetic association studies using tag SNP genotypes. Please visit http: //www.ucd.ie/genepi/hapmixmap for more details.
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gfit
gfit creates an interface between computational models and experimental data and provides tools for their analysis. Audience: Developers, Education, Science/Re
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Veterinary/VMDB HL7 library
The Veterinary VMDB HL7 Library Project. Audience: Healthcare Industry, Science/Research. Programming Language: C++, Java. Categories: Medical Science Apps.
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IVuPy
IVuPy is a set of Python bindings for the Coin3D C++ class libraries which serve to create software for 3D visualization in science and engineering. IVuPy aims
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SARSE
SARSE is a scientific data editor that uses the extendable column format, allows interactive overview, tracks editing history, and has a user extendable tool b
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Autoencoders
This is the source code for my 11th grade science fair project. It involves the use of autoencoders to improve error rates with small amounts of labeled data b
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XStar
A Collection of STAR/CIF processing libraries and related tools, including sub-projects: AStar, TEStar and others. Audience: Advanced End Users, Developers, Sc
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PySpline
PySpline is a graphical, cross-platform program for processing X-ray absorption spectroscopy (XAS) and Extended X-ray absorption fine structure (EXAFS) data. I
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BioCSharp
BioCSharp is an open-source project designed to provide a bioinformatics .NET framework for processing biological data. It will include objects for manipulatin
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NullAllEst
NullAllEst is the implementation of a maximum likelihood algorithm to estimate the frequency of a null allele in microsatellite genetic data. A Markov Chain Mo
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OSGMM
OSGMM, the Open Science Grid Match Maker, is a match maker which sits on top of the OSG Client software stack. It gets site information from ReSS and uses a fe
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PyMOlyze
PyMOlyze is a graphical program to analyze the results of quantum chemistry (HF/DFT) calculations. Features include various population analyses, fragment analy
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NAMD Log Parser
NAMD Log Parser sorts through the log file generated by NAMD and extracts energy information to export to a graphing program or used in the basic graph provide
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libcfp
A Library for Chemical Formula Parsing. Syntax only, no semantics. No external library dependencies, namespace std: : only. Uses UnitTest++ during development
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Hanalyzer
The Hanalyzer is a tool designed to help biologists explain results observed in genome-scale experiments and to generate new hypotheses. It combines informatio
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IterMap
Contains various algorithms that maps short reads produced from Illumina (Solexa) Genome Analyzer, or Applied Biosystems' SOLiD System, to a reference sequ
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mapstedi
The University of Colorado Museum (UCM), Denver Museum of Nature and Science (DMNS), and Denver Botanic Gardens (DBG) are collaborating to convert their separa
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The Soccer Theory
2D soccer simulation focussing the theoretical covering strategies of the game. Academic research tool based on computational geometry science. Audience: Scien
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PGAPy
pgapack, the parallel genetic algorithm library is a powerfull genetic algorithm library by D. Levine, Mathematics and Computer Science Division Argonne Nation
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PyTuneSounds
PyTuneSounds is a application that lets the user tune the volumes of sounds in a variety of ways, e.g. to use these in psychoacoustic experiments. It is possib
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Tahoe
Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior. Audience: Science/Re
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FociCounter
FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity
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PASSIM
The Patient and Sample System for Information Management (PASSIM) is a system for annotation and storage of data, associated with the collection of samples in
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jadab
Not yet playable. jadab is a Dots and Boxes playing program. It uses modern algorithms and graph theory to play the twin game, Strings and Coins. It is being d
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Gvib
GVIB is a user friendly package for vibrational analysis. Given a molecular geometry, it will calculate vibrational frequencies and intensities using anharmoni
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x2fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. Audience:
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medSLT
medSLT - The Medical Speech Translator. Audience: Information Technology, Science/Research, Education, End Users/Desktop. Programming Language: Prolog, C, Java
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DRCS
DRCS (Dimensionless Reaction Coordinate Software) calculates a dimensionless reaction coordinate for chemical reactions that can be used to classify transition
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BioQuery
BioQuery is a bioinformatics tool that acts as a query builder for genetic, protein, publication, and other biomedical databases. BioQuery is also an update se
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ADMIXMAP
A program to model admixture using marker genotype data. Please visit http: //homepages.ed.ac.uk/pmckeigu/admixmap/index.html for more information. Audience: S
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Comparative Genomics Vocabulary
The Comparative Genomics Vocabulary (CGV) is a SKOS representation of comparative genomics containing terms, text definitions and synonyms of the domain. The v
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KESM Stack Processor
This program is designed to create usable RAW 3D data volumes from images produced using Knife-Edge Scanning Microscopy. Audience: Science/Research. Categories
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SynapticSimulator
The Synaptic Simulator is a program which simulates models of single neuronal synapses and compartments, complex constructs of such models. Furthermore the pro
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BioEra
BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR
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runsbml
runsbml - Pathway Simulation Tool emulates the dynamics of biological pathways by calculating concentrations of biochemical compounds at different times and co
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